Interesting Talks

  1. Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED, link
  2. A comprehensive benchmarking of WGS-based structural variant callers, link
  3. Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal, link
  4. Bionitio: building better bioinformatics tools with batteries included, link
  5. Galaxy, Selenium, and End-to-end Testing, link
  6. The cloud-native Galaxy: Galaxy on Kubernetes, link
  7. AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud, link
  8. Shesmu: A bioinformatics orchestration tool, link
  9. Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org, link
  10. MultiQC updates: Visualising results from common bioinformatics tools, link
  11. CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language, link
  12. Challenges in implementing Janis: A generator for CWL and WDL pipelines, link
  13. The all-new Genomics Virtual Lab, link
  14. MALVIRUS: viral variant calling made easy, link
  15. Serratus: Ultra-deep search for novel coronaviruses, link
  16. Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework, link
  17. Secondary analysis of publicly available omics data across almost 3 million publications, link
  18. Rapidly creating portable pipelines with aCLImatise and Basecamp, link

Interesting Tools

  1. Bionitio
    Doc
    github

  2. JBrowse 2
    plugin development
    Embedding in your website

  3. Nextflow
    Sarek is a workflow designed to detect variants on whole genome or targeted sequencing data.
    Nextflow tower is an open source monitoring and managing platform for Nextflow workflows.
    Nextflow tutorial 1, tutorial 2

  4. Tavis CI, Continuous integration testing
    Tutorial
    Core concepts

  5. Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK
    readthedocs
    workshop 1
    workshop 2

  6. Galaxy Training, link

Todo(maybe)

  1. Implement Travis CI to this hugo website
  2. Implement Bionitio

Bioinformatics hackathon

  1. hackseq

Build Status